SubtiBank SubtiBank
ylqH [2018-10-22 09:12:07]
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ylqH [2018-10-22 09:12:07]

similar to flagellar biosynthetic protein
locus
BSU16080
pI
7.26
mw
10.47 kDa
protein length
93 aa Sequence Blast
gene length
279 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.1|Exponential and early post-exponential lifestyles] → [category|SW 4.1.1|Motility and chemotaxis] → [category|SW 4.1.1.3|Flagellar proteins/ based on similarity]

    • Gene

    Coordinates
    1,679,977 → 1,680,258

    The protein

    Structure

  • [PDB|3B0Z] (from Salmonella typhimurium, corresponds to aa 30 ... 109 of YlqH, 40% identity)

    • Expression and Regulation

    Operons

    genes
    [gene|D5275ECDC2A70FBAC2CA5980F04B272C3328FC90|rnhB]-[gene|0D4A4A1B2FD9D0698D0A65010A8ABC84DA7386A2|ylqG]-[gene|3F271D9FFE4F30D845319CD71662695AA592EC8F|ylqH]
    description
    [Pubmed|26577401]

    sigma factors

  • [protein|7024E4162A6D827069F882FDEACA696EBC05DD40|SigD]: sigma factor, [Pubmed|26577401], in [regulon|7024E4162A6D827069F882FDEACA696EBC05DD40|SigD regulon]
    • view in new tab

    genes
    [gene|54CD247926F7FABE4ACE85EB7021B62500B47260|rbgA]-[gene|D5275ECDC2A70FBAC2CA5980F04B272C3328FC90|rnhB]-[gene|0D4A4A1B2FD9D0698D0A65010A8ABC84DA7386A2|ylqG]-[gene|3F271D9FFE4F30D845319CD71662695AA592EC8F|ylqH]
    description
    [Pubmed|22383849]
    view in new tab

    Biological materials

    Mutant

  • MGNA-B175 (ylqH::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1174 NBRP B. subtilis, Japan]
  • 1A828 ( ''ylqH''::''erm''), [Pubmed|12682299], available at [http://pasture.asc.ohio-state.edu/BGSC/getdetail.cfm?bgscid=1A828&Search=1A828 BGSC]
  • BKE16080 (Δ[gene|3F271D9FFE4F30D845319CD71662695AA592EC8F|ylqH]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE16080 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TTTTCTGATCGGTGTCTGCT, downstream forward: _UP4_TAGCTAAAATATTCCCCATC
  • BKK16080 (Δ[gene|3F271D9FFE4F30D845319CD71662695AA592EC8F|ylqH]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK16080 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TTTTCTGATCGGTGTCTGCT, downstream forward: _UP4_TAGCTAAAATATTCCCCATC

    • References

  • 26577401